Detailed information of SNP:
|
SNP ID:
sf0607377049(Gbrowse)
Chromosome: chr06 Position: 7377049 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 58.97% | 41.03% |
| All Indica | 796 | 30.03% | 69.97% |
| All Japonica | 497 | 97.59% | 2.41% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 372 | 31.99% | 68.01% |
| Indica II | 213 | 26.29% | 73.71% |
| Indica Intermediate | 211 | 30.33% | 69.67% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 88.24% | 11.76% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0607377049 | A->C | INTERGENIC | None |