Detailed information of SNP:



SNP ID: sf0607377868(Gbrowse)

Chromosome: chr06

Position: 7377868
Major allele: T

Minor allele: C

Reference allele: T

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of T(major allele)Frequency of C(minor allele)
All1414 60.96% 39.04%
All Indica794 32.12% 67.88%
All Japonica497 99.60% 0.40%
Aus67 100.00% 0.00%
Indica I374 34.22% 65.78%
Indica II211 27.01% 72.99%
Indica Intermediate209 33.49% 66.51%
Temperate Japonica335 99.70% 0.30%
Tropical Japonica94 100.00% 0.00%
Japonica Intermediate68 98.53% 1.47%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 73.81% 26.19%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0607377868 T->C LOC_Os06g13420(LOC_Os06g13420.1) Non-Synonymous SNP