Detailed information of SNP:
|
SNP ID:
sf0607377868(Gbrowse)
Chromosome: chr06 Position: 7377868 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1414 | 60.96% | 39.04% |
| All Indica | 794 | 32.12% | 67.88% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 34.22% | 65.78% |
| Indica II | 211 | 27.01% | 72.99% |
| Indica Intermediate | 209 | 33.49% | 66.51% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0607377868 | T->C | LOC_Os06g13420(LOC_Os06g13420.1) | Non-Synonymous SNP |