Detailed information of SNP:
|
SNP ID:
sf0607382126(Gbrowse)
Chromosome: chr06 Position: 7382126 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1230 | 89.51% | 10.49% |
| All Indica | 798 | 94.11% | 5.89% |
| All Japonica | 329 | 77.51% | 22.49% |
| Aus | 51 | 100.00% | 0.00% |
| Indica I | 375 | 97.60% | 2.40% |
| Indica II | 212 | 94.34% | 5.66% |
| Indica Intermediate | 211 | 87.68% | 12.32% |
| Temperate Japonica | 213 | 90.61% | 9.39% |
| Tropical Japonica | 68 | 30.88% | 69.12% |
| Japonica Intermediate | 48 | 85.42% | 14.58% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 78.95% | 21.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0607382126 | C->T | INTERGENIC | None |