Detailed information of SNP:
|
SNP ID:
sf0607382998(Gbrowse)
Chromosome: chr06 Position: 7382998 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 56.49% | 43.51% |
| All Indica | 799 | 93.62% | 6.38% |
| All Japonica | 497 | 1.01% | 98.99% |
| Aus | 67 | 22.39% | 77.61% |
| Indica I | 375 | 97.07% | 2.93% |
| Indica II | 213 | 93.90% | 6.10% |
| Indica Intermediate | 211 | 87.20% | 12.80% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 46.34% | 53.66% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0607382998 | C->T | INTERGENIC | None |