Detailed information of SNP:
|
SNP ID:
sf0607386547(Gbrowse)
Chromosome: chr06 Position: 7386547 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1381 | 93.92% | 6.08% |
| All Indica | 767 | 92.70% | 7.30% |
| All Japonica | 492 | 95.53% | 4.47% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 358 | 94.13% | 5.87% |
| Indica II | 205 | 90.24% | 9.76% |
| Indica Intermediate | 204 | 92.65% | 7.35% |
| Temperate Japonica | 333 | 95.20% | 4.80% |
| Tropical Japonica | 93 | 93.55% | 6.45% |
| Japonica Intermediate | 66 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 84.62% | 15.38% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0607386547 | T->C | INTERGENIC | None |