Detailed information of SNP:



SNP ID: sf0607414579(Gbrowse)

Chromosome: chr06

Position: 7414579
Major allele: T

Minor allele: C

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of T(major allele)Frequency of C(minor allele)
All1419 54.33% 45.67%
All Indica799 93.87% 6.13%
All Japonica497 0.80% 99.20%
Aus67 0.00% 100.00%
Indica I375 97.33% 2.67%
Indica II213 93.90% 6.10%
Indica Intermediate211 87.68% 12.32%
Temperate Japonica335 0.60% 99.40%
Tropical Japonica94 1.06% 98.94%
Japonica Intermediate68 1.47% 98.53%
Group VI/Aromatic14 0.00% 100.00%
Intermediate42 40.48% 59.52%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0607414579 C->T INTERGENIC None