Detailed information of SNP:
|
SNP ID:
sf0607416913(Gbrowse)
Chromosome: chr06 Position: 7416913 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1401 | 54.82% | 45.18% |
| All Indica | 783 | 21.33% | 78.67% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 368 | 23.10% | 76.90% |
| Indica II | 208 | 11.54% | 88.46% |
| Indica Intermediate | 207 | 28.02% | 71.98% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 65.00% | 35.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0607416913 | G->A | LOC_Os06g13470(LOC_Os06g13470.1) | INTRON |