Detailed information of SNP:
|
SNP ID:
sf0607463840(Gbrowse)
Chromosome: chr06 Position: 7463840 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 57.08% | 42.92% |
| All Indica | 799 | 94.37% | 5.63% |
| All Japonica | 497 | 1.21% | 98.79% |
| Aus | 67 | 19.40% | 80.60% |
| Indica I | 375 | 97.33% | 2.67% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 211 | 87.20% | 12.80% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0607463840 | T->C | INTERGENIC | None |