Detailed information of SNP:
|
SNP ID:
sf0607489139(Gbrowse)
Chromosome: chr06 Position: 7489139 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1353 | 97.04% | 2.96% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 438 | 90.87% | 9.13% |
| Aus | 61 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 301 | 92.36% | 7.64% |
| Tropical Japonica | 79 | 96.20% | 3.80% |
| Japonica Intermediate | 58 | 75.86% | 24.14% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0607489139 | T->G | LOC_Os06g13570(LOC_Os06g13570.1) | INTRON |