Detailed information of SNP:
SNP ID:
sf0607489139(Gbrowse)
Chromosome: chr06 Position: 7489139 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
---|---|---|---|
All | 1353 | 97.04% | 2.96% |
All Indica | 799 | 100.00% | 0.00% |
All Japonica | 438 | 90.87% | 9.13% |
Aus | 61 | 100.00% | 0.00% |
Indica I | 375 | 100.00% | 0.00% |
Indica II | 213 | 100.00% | 0.00% |
Indica Intermediate | 211 | 100.00% | 0.00% |
Temperate Japonica | 301 | 92.36% | 7.64% |
Tropical Japonica | 79 | 96.20% | 3.80% |
Japonica Intermediate | 58 | 75.86% | 24.14% |
Group VI/Aromatic | 14 | 100.00% | 0.00% |
Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0607489139 | T->G | LOC_Os06g13570(LOC_Os06g13570.1) | INTRON |