Detailed information of SNP:
|
SNP ID:
sf0607500603(Gbrowse)
Chromosome: chr06 Position: 7500603 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 52.26% | 47.74% |
| All Indica | 796 | 17.34% | 82.66% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 19.03% | 80.97% |
| Indica II | 213 | 8.45% | 91.55% |
| Indica Intermediate | 210 | 23.33% | 76.67% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0607500603 | T->G | INTERGENIC | None |