Detailed information of SNP:
|
SNP ID:
sf0607501730(Gbrowse)
Chromosome: chr06 Position: 7501730 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 50.35% | 49.65% |
| All Indica | 798 | 16.17% | 83.83% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 82.09% | 17.91% |
| Indica I | 374 | 17.91% | 82.09% |
| Indica II | 213 | 7.51% | 92.49% |
| Indica Intermediate | 211 | 21.80% | 78.20% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0607501730 | C->G | INTERGENIC | None |