Detailed information of SNP:
|
SNP ID:
sf0607506936(Gbrowse)
Chromosome: chr06 Position: 7506936 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 59.11% | 40.89% |
| All Indica | 796 | 95.85% | 4.15% |
| All Japonica | 497 | 5.23% | 94.77% |
| Aus | 67 | 19.40% | 80.60% |
| Indica I | 375 | 96.00% | 4.00% |
| Indica II | 210 | 95.71% | 4.29% |
| Indica Intermediate | 211 | 95.73% | 4.27% |
| Temperate Japonica | 335 | 6.57% | 93.43% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0607506936 | C->T | INTERGENIC | None |