Detailed information of SNP:
|
SNP ID:
sf0607605977(Gbrowse)
Chromosome: chr06 Position: 7605977 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 53.07% | 46.93% |
| All Indica | 799 | 27.41% | 72.59% |
| All Japonica | 497 | 91.55% | 8.45% |
| Aus | 67 | 82.09% | 17.91% |
| Indica I | 375 | 13.60% | 86.40% |
| Indica II | 213 | 61.03% | 38.97% |
| Indica Intermediate | 211 | 18.01% | 81.99% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 94 | 65.96% | 34.04% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0607605977 | T->C | INTERGENIC | None |