Detailed information of SNP:



SNP ID: sf0607605977(Gbrowse)

Chromosome: chr06

Position: 7605977
Major allele: T

Minor allele: C

Reference allele: T

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of T(major allele)Frequency of C(minor allele)
All1419 53.07% 46.93%
All Indica799 27.41% 72.59%
All Japonica497 91.55% 8.45%
Aus67 82.09% 17.91%
Indica I375 13.60% 86.40%
Indica II213 61.03% 38.97%
Indica Intermediate211 18.01% 81.99%
Temperate Japonica335 98.21% 1.79%
Tropical Japonica94 65.96% 34.04%
Japonica Intermediate68 94.12% 5.88%
Group VI/Aromatic14 0.00% 100.00%
Intermediate42 57.14% 42.86%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0607605977 T->C INTERGENIC None