Detailed information of SNP:
|
SNP ID:
sf0607613171(Gbrowse)
Chromosome: chr06 Position: 7613171 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1405 | 87.12% | 12.88% |
| All Indica | 785 | 77.58% | 22.42% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 369 | 65.31% | 34.69% |
| Indica II | 209 | 88.04% | 11.96% |
| Indica Intermediate | 207 | 88.89% | 11.11% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0607613171 | G->A | INTERGENIC | None |