Detailed information of SNP:



SNP ID: sf0607628450(Gbrowse)

Chromosome: chr06

Position: 7628450
Major allele: A

Minor allele: C

Reference allele: A

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of A(major allele)Frequency of C(minor allele)
All1419 53.00% 47.00%
All Indica799 27.28% 72.72%
All Japonica497 91.55% 8.45%
Aus67 82.09% 17.91%
Indica I375 13.60% 86.40%
Indica II213 61.03% 38.97%
Indica Intermediate211 17.54% 82.46%
Temperate Japonica335 98.21% 1.79%
Tropical Japonica94 65.96% 34.04%
Japonica Intermediate68 94.12% 5.88%
Group VI/Aromatic14 0.00% 100.00%
Intermediate42 57.14% 42.86%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0607628450 A->C INTERGENIC None