Detailed information of SNP:
|
SNP ID:
sf0607673963(Gbrowse)
Chromosome: chr06 Position: 7673963 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1410 | 83.12% | 16.88% |
| All Indica | 790 | 71.65% | 28.35% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 375 | 66.13% | 33.87% |
| Indica II | 211 | 95.26% | 4.74% |
| Indica Intermediate | 204 | 57.35% | 42.65% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0607673963 | G->C | INTERGENIC | None |