Detailed information of SNP:
|
SNP ID:
sf0607693366(Gbrowse)
Chromosome: chr06 Position: 7693366 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1405 | 87.47% | 12.53% |
| All Indica | 792 | 80.30% | 19.70% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 62 | 93.55% | 6.45% |
| Indica I | 370 | 80.81% | 19.19% |
| Indica II | 213 | 87.32% | 12.68% |
| Indica Intermediate | 209 | 72.25% | 27.75% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 12 | 33.33% | 66.67% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0607693366 | G->A | LOC_Os06g13850(LOC_Os06g13850.1) | UTR_3_PRIME |