Detailed information of SNP:
|
SNP ID:
sf0607698286(Gbrowse)
Chromosome: chr06 Position: 7698286 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1404 | 88.11% | 11.89% |
| All Indica | 784 | 78.95% | 21.05% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 368 | 66.58% | 33.42% |
| Indica II | 211 | 91.47% | 8.53% |
| Indica Intermediate | 205 | 88.29% | 11.71% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0607698286 | C->T | LOC_Os06g13860(LOC_Os06g13860.1) | Synonymous |
| sf0607698286 | C->T | LOC_Os06g13860(LOC_Os06g13860.2) | Synonymous |