Detailed information of SNP:
|
SNP ID:
sf0607754408(Gbrowse)
Chromosome: chr06 Position: 7754408 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1400 | 68.50% | 31.50% |
| All Indica | 782 | 44.50% | 55.50% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 365 | 23.84% | 76.16% |
| Indica II | 211 | 81.04% | 18.96% |
| Indica Intermediate | 206 | 43.69% | 56.31% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 87.50% | 12.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0607754408 | C->T | INTERGENIC | None |