Detailed information of SNP:



SNP ID: sf0607754459(Gbrowse)

Chromosome: chr06

Position: 7754459
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1303 87.18% 12.82%
All Indica687 75.69% 24.31%
All Japonica496 100.00% 0.00%
Aus67 100.00% 0.00%
Indica I308 62.99% 37.01%
Indica II197 98.48% 1.52%
Indica Intermediate182 72.53% 27.47%
Temperate Japonica335 100.00% 0.00%
Tropical Japonica94 100.00% 0.00%
Japonica Intermediate67 100.00% 0.00%
Group VI/Aromatic14 100.00% 0.00%
Intermediate39 100.00% 0.00%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0607754459 C->T INTERGENIC None