Detailed information of SNP:
|
SNP ID:
sf0607754459(Gbrowse)
Chromosome: chr06 Position: 7754459 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1303 | 87.18% | 12.82% |
| All Indica | 687 | 75.69% | 24.31% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 308 | 62.99% | 37.01% |
| Indica II | 197 | 98.48% | 1.52% |
| Indica Intermediate | 182 | 72.53% | 27.47% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0607754459 | C->T | INTERGENIC | None |