Detailed information of SNP:
|
SNP ID:
sf0607814297(Gbrowse)
Chromosome: chr06 Position: 7814297 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 57.29% | 42.71% |
| All Indica | 799 | 28.41% | 71.59% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 375 | 13.07% | 86.93% |
| Indica II | 213 | 65.26% | 34.74% |
| Indica Intermediate | 211 | 18.48% | 81.52% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0607814297 | A->G | INTERGENIC | None |