Detailed information of SNP:
|
SNP ID:
sf0607825063(Gbrowse)
Chromosome: chr06 Position: 7825063 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1320 | 93.26% | 6.74% |
| All Indica | 701 | 87.59% | 12.41% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 307 | 84.69% | 15.31% |
| Indica II | 203 | 99.01% | 0.99% |
| Indica Intermediate | 191 | 80.10% | 19.90% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0607825063 | G->A | LOC_Os06g14040(LOC_Os06g14040.1) | Non-Synonymous SNP |