Detailed information of SNP:
|
SNP ID:
sf0607957972(Gbrowse)
Chromosome: chr06 Position: 7957972 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 70.38% | 29.62% |
| All Indica | 798 | 97.87% | 2.13% |
| All Japonica | 497 | 25.55% | 74.45% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 375 | 97.33% | 2.67% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 210 | 98.57% | 1.43% |
| Temperate Japonica | 335 | 35.82% | 64.18% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 7.35% | 92.65% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0607957972 | A->G | INTERGENIC | None |