Detailed information of SNP:
|
SNP ID:
sf0607960608(Gbrowse)
Chromosome: chr06 Position: 7960608 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1400 | 87.86% | 12.14% |
| All Indica | 799 | 99.75% | 0.25% |
| All Japonica | 482 | 68.26% | 31.74% |
| Aus | 65 | 95.38% | 4.62% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 326 | 73.31% | 26.69% |
| Tropical Japonica | 89 | 58.43% | 41.57% |
| Japonica Intermediate | 67 | 56.72% | 43.28% |
| Group VI/Aromatic | 13 | 61.54% | 38.46% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0607960608 | A->G | LOC_Os06g14270(LOC_Os06g14270.1) | INTRON |