Detailed information of SNP:
|
SNP ID:
sf0607979328(Gbrowse)
Chromosome: chr06 Position: 7979328 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1413 | 75.87% | 24.13% |
| All Indica | 794 | 57.93% | 42.07% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 372 | 40.05% | 59.95% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 209 | 53.59% | 46.41% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0607979328 | A->C | LOC_Os06g14300(LOC_Os06g14300.1) | INTRON |