Detailed information of SNP:
|
SNP ID:
sf0607979338(Gbrowse)
Chromosome: chr06 Position: 7979338 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 63.20% | 36.80% |
| All Indica | 794 | 58.56% | 41.44% |
| All Japonica | 496 | 75.60% | 24.40% |
| Aus | 67 | 13.43% | 86.57% |
| Indica I | 372 | 41.40% | 58.60% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 209 | 53.59% | 46.41% |
| Temperate Japonica | 334 | 65.57% | 34.43% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0607979338 | G->A | LOC_Os06g14300(LOC_Os06g14300.1) | INTRON |