Detailed information of SNP:
|
SNP ID:
sf0607987536(Gbrowse)
Chromosome: chr06 Position: 7987536 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 94.86% | 5.14% |
| All Indica | 799 | 99.12% | 0.88% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 11.94% | 88.06% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0607987536 | C->T | LOC_Os06g14324(LOC_Os06g14324.1) | INTRON |