Detailed information of SNP:
|
SNP ID:
sf0607987537(Gbrowse)
Chromosome: chr06 Position: 7987537 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 62.61% | 37.39% |
| All Indica | 795 | 57.86% | 42.14% |
| All Japonica | 497 | 75.45% | 24.55% |
| Aus | 67 | 10.45% | 89.55% |
| Indica I | 372 | 40.05% | 59.95% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 210 | 53.33% | 46.67% |
| Temperate Japonica | 335 | 65.37% | 34.63% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0607987537 | G->A | LOC_Os06g14324(LOC_Os06g14324.1) | INTRON |