Detailed information of SNP:
|
SNP ID:
sf0607990417(Gbrowse)
Chromosome: chr06 Position: 7990417 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1406 | 60.53% | 39.47% |
| All Indica | 799 | 43.18% | 56.82% |
| All Japonica | 485 | 82.47% | 17.53% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 60.53% | 39.47% |
| Indica II | 213 | 8.45% | 91.55% |
| Indica Intermediate | 211 | 47.39% | 52.61% |
| Temperate Japonica | 323 | 74.61% | 25.39% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0607990417 | G->A | INTERGENIC | None |