Detailed information of SNP:
|
SNP ID:
sf0607990759(Gbrowse)
Chromosome: chr06 Position: 7990759 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 55.22% | 44.78% |
| All Indica | 799 | 41.30% | 58.70% |
| All Japonica | 496 | 81.45% | 18.55% |
| Aus | 67 | 19.40% | 80.60% |
| Indica I | 375 | 57.60% | 42.40% |
| Indica II | 213 | 7.98% | 92.02% |
| Indica Intermediate | 211 | 45.97% | 54.03% |
| Temperate Japonica | 334 | 75.45% | 24.55% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0607990759 | A->G | INTERGENIC | None |