Detailed information of SNP:
|
SNP ID:
sf0607994577(Gbrowse)
Chromosome: chr06 Position: 7994577 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 59.80% | 40.20% |
| All Indica | 798 | 42.23% | 57.77% |
| All Japonica | 497 | 81.29% | 18.71% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 59.20% | 40.80% |
| Indica II | 213 | 8.92% | 91.08% |
| Indica Intermediate | 210 | 45.71% | 54.29% |
| Temperate Japonica | 335 | 74.93% | 25.07% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0607994577 | C->T | INTERGENIC | None |