Detailed information of SNP:
|
SNP ID:
sf0607998807(Gbrowse)
Chromosome: chr06 Position: 7998807 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 86.96% | 13.04% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 497 | 75.45% | 24.55% |
| Aus | 67 | 11.94% | 88.06% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 65.07% | 34.93% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0607998807 | G->T | LOC_Os06g14350(LOC_Os06g14350.2) | INTRON |
| sf0607998807 | G->T | LOC_Os06g14350(LOC_Os06g14350.1) | INTRON |