Detailed information of SNP:
|
SNP ID:
sf0608002491(Gbrowse)
Chromosome: chr06 Position: 8002491 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 74.81% | 25.19% |
| All Indica | 798 | 56.64% | 43.36% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 39.04% | 60.96% |
| Indica II | 213 | 92.96% | 7.04% |
| Indica Intermediate | 211 | 51.18% | 48.82% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0608002491 | G->A | LOC_Os06g14350(LOC_Os06g14350.2) | INTRON |
| sf0608002491 | G->A | LOC_Os06g14350(LOC_Os06g14350.1) | INTRON |