Detailed information of SNP:
|
SNP ID:
sf0608002501(Gbrowse)
Chromosome: chr06 Position: 8002501 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 60.93% | 39.07% |
| All Indica | 798 | 43.73% | 56.27% |
| All Japonica | 497 | 81.89% | 18.11% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 60.70% | 39.30% |
| Indica II | 213 | 8.92% | 91.08% |
| Indica Intermediate | 211 | 48.82% | 51.18% |
| Temperate Japonica | 335 | 75.82% | 24.18% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0608002501 | A->G | LOC_Os06g14350(LOC_Os06g14350.2) | INTRON |
| sf0608002501 | A->G | LOC_Os06g14350(LOC_Os06g14350.1) | INTRON |