Detailed information of SNP:
|
SNP ID:
sf0608023131(Gbrowse)
Chromosome: chr06 Position: 8023131 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 65.33% | 34.67% |
| All Indica | 799 | 40.55% | 59.45% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 60.00% | 40.00% |
| Indica II | 213 | 8.45% | 91.55% |
| Indica Intermediate | 211 | 38.39% | 61.61% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0608023131 | C->T | INTERGENIC | None |