Detailed information of SNP:
|
SNP ID:
sf0608046687(Gbrowse)
Chromosome: chr06 Position: 8046687 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1379 | 96.16% | 3.84% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 458 | 88.65% | 11.35% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 319 | 88.09% | 11.91% |
| Tropical Japonica | 83 | 92.77% | 7.23% |
| Japonica Intermediate | 56 | 85.71% | 14.29% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0608046687 | G->A | LOC_Os06g14406(LOC_Os06g14406.1) | Non-Synonymous SNP |