Detailed information of SNP:
|
SNP ID:
sf0608070649(Gbrowse)
Chromosome: chr06 Position: 8070649 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1400 | 51.86% | 48.14% |
| All Indica | 796 | 40.20% | 59.80% |
| All Japonica | 483 | 77.85% | 22.15% |
| Aus | 65 | 6.15% | 93.85% |
| Indica I | 375 | 59.73% | 40.27% |
| Indica II | 213 | 8.45% | 91.55% |
| Indica Intermediate | 208 | 37.50% | 62.50% |
| Temperate Japonica | 321 | 67.91% | 32.09% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0608070649 | T->A | INTERGENIC | None |