Detailed information of SNP:
|
SNP ID:
sf0608079580(Gbrowse)
Chromosome: chr06 Position: 8079580 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 77.80% | 22.20% |
| All Indica | 799 | 99.25% | 0.75% |
| All Japonica | 497 | 42.05% | 57.95% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 57.91% | 42.09% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 68 | 16.18% | 83.82% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0608079580 | C->T | INTERGENIC | None |