Detailed information of SNP:
|
SNP ID:
sf0608085565(Gbrowse)
Chromosome: chr06 Position: 8085565 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1284 | 93.30% | 6.70% |
| All Indica | 799 | 99.50% | 0.50% |
| All Japonica | 371 | 79.25% | 20.75% |
| Aus | 64 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 267 | 86.52% | 13.48% |
| Tropical Japonica | 55 | 43.64% | 56.36% |
| Japonica Intermediate | 49 | 79.59% | 20.41% |
| Group VI/Aromatic | 12 | 91.67% | 8.33% |
| Intermediate | 38 | 89.47% | 10.53% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0608085565 | C->T | INTERGENIC | None |