Detailed information of SNP:
|
SNP ID:
sf0608093379(Gbrowse)
Chromosome: chr06 Position: 8093379 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 77.52% | 22.48% |
| All Indica | 799 | 98.25% | 1.75% |
| All Japonica | 497 | 42.25% | 57.75% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 335 | 58.21% | 41.79% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 68 | 16.18% | 83.82% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0608093379 | G->A | INTERGENIC | None |