Detailed information of SNP:
|
SNP ID:
sf0608095554(Gbrowse)
Chromosome: chr06 Position: 8095554 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 61.40% | 38.60% |
| All Indica | 797 | 71.27% | 28.73% |
| All Japonica | 497 | 41.45% | 58.55% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 374 | 55.61% | 44.39% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 210 | 76.67% | 23.33% |
| Temperate Japonica | 335 | 58.21% | 41.79% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 14.71% | 85.29% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0608095554 | G->A | INTERGENIC | None |