Detailed information of SNP:
|
SNP ID:
sf0608110690(Gbrowse)
Chromosome: chr06 Position: 8110690 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1395 | 60.65% | 39.35% |
| All Indica | 799 | 70.96% | 29.04% |
| All Japonica | 497 | 41.65% | 58.35% |
| Aus | 45 | 88.89% | 11.11% |
| Indica I | 375 | 55.73% | 44.27% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 211 | 75.36% | 24.64% |
| Temperate Japonica | 335 | 58.51% | 41.49% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 14.71% | 85.29% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 40 | 55.00% | 45.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0608110690 | A->G | INTERGENIC | None |