Detailed information of SNP:
|
SNP ID:
sf0608111197(Gbrowse)
Chromosome: chr06 Position: 8111197 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1295 | 91.27% | 8.73% |
| All Indica | 797 | 100.00% | 0.00% |
| All Japonica | 380 | 70.79% | 29.21% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 211 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 277 | 74.37% | 25.63% |
| Tropical Japonica | 58 | 74.14% | 25.86% |
| Japonica Intermediate | 45 | 44.44% | 55.56% |
| Group VI/Aromatic | 13 | 92.31% | 7.69% |
| Intermediate | 39 | 97.44% | 2.56% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0608111197 | C->G | INTERGENIC | None |