Detailed information of SNP:
|
SNP ID:
sf0608131927(Gbrowse)
Chromosome: chr06 Position: 8131927 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1355 | 97.93% | 2.07% |
| All Indica | 798 | 100.00% | 0.00% |
| All Japonica | 440 | 93.64% | 6.36% |
| Aus | 65 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 307 | 91.21% | 8.79% |
| Tropical Japonica | 76 | 100.00% | 0.00% |
| Japonica Intermediate | 57 | 98.25% | 1.75% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 39 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0608131927 | C->T | LOC_Os06g14470(LOC_Os06g14470.2) | SNPs that introduce initiation codons |
| sf0608131927 | C->T | LOC_Os06g14470(LOC_Os06g14470.1) | INTRON |