Detailed information of SNP:
|
SNP ID:
sf0608140427(Gbrowse)
Chromosome: chr06 Position: 8140427 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1401 | 97.57% | 2.43% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 481 | 93.14% | 6.86% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 329 | 90.27% | 9.73% |
| Tropical Japonica | 88 | 100.00% | 0.00% |
| Japonica Intermediate | 64 | 98.44% | 1.56% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0608140427 | C->A | INTERGENIC | None |