Detailed information of SNP:
|
SNP ID:
sf0608144994(Gbrowse)
Chromosome: chr06 Position: 8144994 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 55.74% | 44.26% |
| All Indica | 799 | 71.09% | 28.91% |
| All Japonica | 497 | 41.05% | 58.95% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 55.47% | 44.53% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 211 | 76.30% | 23.70% |
| Temperate Japonica | 335 | 57.91% | 42.09% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 14.71% | 85.29% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0608144994 | T->C | LOC_Os06g14490(LOC_Os06g14490.2) | INTRON |
| sf0608144994 | T->C | LOC_Os06g14490(LOC_Os06g14490.1) | INTRON |