Detailed information of SNP:
|
SNP ID:
sf0608149755(Gbrowse)
Chromosome: chr06 Position: 8149755 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1126 | 64.83% | 35.17% |
| All Indica | 587 | 98.98% | 1.02% |
| All Japonica | 494 | 25.51% | 74.49% |
| Aus | 8 | 37.50% | 62.50% |
| Indica I | 222 | 99.10% | 0.90% |
| Indica II | 203 | 98.03% | 1.97% |
| Indica Intermediate | 162 | 100.00% | 0.00% |
| Temperate Japonica | 334 | 36.53% | 63.47% |
| Tropical Japonica | 93 | 0.00% | 100.00% |
| Japonica Intermediate | 67 | 5.97% | 94.03% |
| Group VI/Aromatic | 5 | 0.00% | 100.00% |
| Intermediate | 32 | 62.50% | 37.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0608149755 | T->C | INTERGENIC | None |