Detailed information of SNP:
|
SNP ID:
sf0608159465(Gbrowse)
Chromosome: chr06 Position: 8159465 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1409 | 51.17% | 48.83% |
| All Indica | 790 | 31.14% | 68.86% |
| All Japonica | 497 | 74.85% | 25.15% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 370 | 47.03% | 52.97% |
| Indica II | 211 | 8.53% | 91.47% |
| Indica Intermediate | 209 | 25.84% | 74.16% |
| Temperate Japonica | 335 | 63.88% | 36.12% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0608159465 | T->A | INTERGENIC | None |