Detailed information of SNP:
|
SNP ID:
sf0608163174(Gbrowse)
Chromosome: chr06 Position: 8163174 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 86.19% | 13.81% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 497 | 74.85% | 25.15% |
| Aus | 66 | 10.61% | 89.39% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 64.18% | 35.82% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 8 | 62.50% | 37.50% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0608163174 | C->T | INTERGENIC | None |