Detailed information of SNP:
|
SNP ID:
sf0608186759(Gbrowse)
Chromosome: chr06 Position: 8186759 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 56.88% | 43.12% |
| All Indica | 797 | 26.98% | 73.02% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 374 | 40.37% | 59.63% |
| Indica II | 213 | 6.10% | 93.90% |
| Indica Intermediate | 210 | 24.29% | 75.71% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0608186759 | C->A | INTERGENIC | None |